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Creators/Authors contains: "Xu, Jiashu"

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  1. Free, publicly-accessible full text available January 1, 2026
  2. The popularization of Text-to-Image (T2I) diffusion mod- els enables the generation of high-quality images from text descriptions. However, generating diverse customized im- ages with reference visual attributes remains challenging. This work focuses on personalizing T2I diffusion models at a more abstract concept or category level, adapting com- monalities from a set of reference images while creating new instances with sufficient variations. We introduce a solution that allows a pretrained T2I diffusion model to learn a set of soft prompts, enabling the generation of novel images by sampling prompts from the learned distri- bution. These prompts offer text-guided editing capabilities and additional flexibility in controlling variation and mix- ing between multiple distributions. We also show the adapt- ability of the learned prompt distribution to other tasks, such as text-to-3D. Finally we demonstrate effectiveness of our approach through quantitative analysis including auto- matic evaluation and human assessment. 
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  3. Two key obstacles in biomedical relation extraction (RE) are the scarcity of annotations and the prevalence of instances without explicitly pre-defined labels due to low annotation coverage. Existing approaches, which treat biomedical RE as a multi-class classification task, often result in poor generalization in low-resource settings and do not have the ability to make selective prediction on unknown cases but give a guess from seen relations, hindering the applicability of those approaches. We present NBR, which converts biomedical RE as natural language inference formulation through indirect supervision. By converting relations to natural language hypotheses, NBR is capable of exploiting semantic cues to alleviate annotation scarcity. By incorporating a ranking-based loss that implicitly calibrates abstinent instances, NBR learns a clearer decision boundary and is instructed to abstain on uncertain instances. Extensive experiments on three widely-used biomedical RE benchmarks, namely ChemProt, DDI and GAD, verify the effectiveness of NBR in both full-set and low-resource regimes. Our analysis demonstrates that indirect supervision benefits biomedical RE even when a domain gap exists, and combining NLI knowledge with biomedical knowledge leads to the best performance gains. 
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  4. Semantic typing aims at classifying tokens or spans of interest in a textual context into semantic categories such as relations, entity types, and event types. The inferred labels of semantic categories meaningfully interpret how machines understand components of text. In this paper, we present UniST, a unified framework for semantic typing that captures label semantics by projecting both inputs and labels into a joint semantic embedding space. To formulate different lexical and relational semantic typing tasks as a unified task, we incorporate task descriptions to be jointly encoded with the input, allowing UniST to be adapted to different tasks without introducing task-specific model components. UniST optimizes a margin ranking loss such that the semantic relatedness of the input and labels is reflected from their embedding similarity. Our experiments demonstrate that UniST achieves strong performance across three semantic typing tasks: entity typing, relation classification and event typing. Meanwhile, UniST effectively transfers semantic knowledge of labels and substantially improves generalizability on inferring rarely seen and unseen types. In addition, multiple semantic typing tasks can be jointly trained within the unified framework, leading to a single compact multi-tasking model that performs comparably to dedicated single-task models, while offering even better transferability. 
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  5. Alkaline phosphatase (ALP) enables intracellular targeting by peptide assemblies, but how the ALP substrates enter cells remains elusive. Here we show that nanoscale phosphopeptide assemblies cluster ALP to enable caveolae-mediated endocytosis (CME) and endosomal escape. Specifically, fluorescent phosphopeptides undergo enzyme-catalyzed self-assembly to form nanofibers. Live cell imaging unveils that phosphopeptides nanoparticles, coincubated with HEK293 cells overexpressing red fluorescent protein-tagged tissue-nonspecific ALP (TNAP-RFP), cluster TNAP-RFP in lipid rafts to enable CME. Further dephosphorylation of the phosphopeptides produces peptidic nanofibers for endosomal escape. Inhibiting TNAP, cleaving the membrane anchored TNAP, or disrupting lipid rafts abolishes the endocytosis. Decreasing the transformation to nanofibers prevents the endosomal escape. As the first study establishing a dynamic continuum of nanoscale assemblies for cellular uptake, this work illustrates an effective design for enzyme-responsive supramolecular therapeutics and provides mechanism insights for understanding the dynamics of cellular uptake of proteins or exogenous peptide aggregates. 
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